rs29837198 SNP Detail

Summary

• ID
  rs29837198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96244729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT AAAGATAATG GACTCTAGAA
  R
  TGAGAAGGCA AGAGAGAAAG GCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46348689	mCV24857957	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss61442321	NES16828800	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A	A	A	G		G	G	A		A
ss136831153	ENSMUSSNP325622	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss323108154	CHEV_9_96263095	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29837198					SNP	G	G	A	G	A	A	A	G	A	A	A	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442321	NES16828800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96244729 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	within coordinates
Cpgi22162	CpG island 22162	827 bp proximal
Gm68867	predicted gene, 68867	within coordinates
Tssr86601	transcription start site region 86601	1248 bp upstream
Tssr90956	transcription start site region 90956	1623 bp downstream
Tssr90957	transcription start site region 90957	1731 bp downstream
Tssr90958	transcription start site region 90958	1755 bp downstream