rs29837621 SNP Detail

Summary

• ID
  rs29837621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37281974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGAAGTG ACACCTTGCG
  CTAGCAATAA CTCGCCCCCT GTAACAAACA TCACACCTAC TCAACTTCCC ACTCCTGTGA
  ATCAGGCAAC TCTAAGCCAA ACACAAGGAA GTGAAGAATT GCTAGTGTCT TCAGCTTCAA
  CACATCTGAC TCCTAACATT ATTTTGTTAA ATCAGGCTCC ACTTACTGCA CCACCGAGTG
  Y
  CAGTTCTTCA CTCCCAAATC ATATGTCCTC TTCAGTCAAT GTCCTTGTAC AGAATCAGCA
  GACGCCTAAC AGTGCTGTTT TAACAGGAAA CAAGGCTGAG GAAGAGGAAG AAATTATAGA
  TGATGATGAT GACATCATTA GCTCCAGTCC AGACTCAGCA GTCAGTAATA CATCTCTGGT
  CCCTCAGGCT GATAACTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887642	NES10949986	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29837621					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887642	NES10949986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37281974 () rs orientation: forward

Symbol	Name	Function Class
Rr8558	regulatory region 8558	1373 bp distal
Zbtb33	zinc finger and BTB domain containing 33	within coordinates