rs29837622 SNP Detail

Summary

• ID
  rs29837622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32810469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGAAGG CCGCAGAGAC
  CCCCCACAAC TAATCAATCG TGAAATCTCT TATCATGAGT GAAAGTAAAT CTGTCTTTTA
  AAATTGATTA TCTCAGGTAC TTTGTTACCA TAATGGAAGA CTAGCTAACA GTGACTAAGA
  TCAACTTGCA TTCAAAGCAA CATAGTACTT ACATAAAGGG AGAGAAGCTA AACAAATGAA
  Y
  AGTAATGCAA GACCCTTTCA GCTTCTACAA AAGCTGTGAA ACAAGAGAGG CTGATCATTG
  ATTGAGGCCA GCCTGCTCTA CAGAGTGAGT TGCAGAACAA CCAGGGCTAC ACAGAGAAAC
  TCCATCTCAA AAAAGGGGAG GGAGCGGGGG GGGGGGGGGG ACGGGGGGGG GGACGGGGGG
  GGGGAACTGA TCAAAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46887643	NES10814472	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29837622					SNP	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887643	NES10814472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32810469 () rs orientation: forward

Symbol	Name	Function Class
Rr374792	regulatory region 374792	1996 bp upstream