rs29837978 SNP Detail

Summary

• ID
  rs29837978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110789864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT AACCAGTGTT CTGCTTCCTG
  Y
  CTTAGGATAA AGGAGGAGTG GGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46345241	mCV25301379	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss136960554	ENSMUSSNP4286098	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss323195058	CHEV_9_110863300	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29837978					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110789864 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr198765	regulatory region 198765	864 bp distal
Rr198766	regulatory region 198766	937 bp proximal
Rr202611	regulatory region 202611	561 bp proximal
Tssr87447	transcription start site region 87447	319 bp downstream
Tssr87448	transcription start site region 87448	30 bp upstream
Tssr87449	transcription start site region 87449	47 bp upstream
Tssr87450	transcription start site region 87450	93 bp upstream
Tssr87451	transcription start site region 87451	131 bp upstream