rs29838132 SNP Detail

Summary

• ID
  rs29838132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36988386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACAGAG ACACTTTAGT
  TCATTCAACA CTATCATCAT AGCGCACACA TCCTGGAGTG CTATACCCCC TCTTCATTTT
  CCTAACAGTT TGGAAGGTAT TCAGAACCCA TCCCAGGGCC AGGTGTGTGC TAGCCATGTG
  CTGTAGCACT GAGCCACTCC CCTGGAAGAG TCACTGCATC TTTCAAATAC CCAGAAACTA
  Y
  GTGATTATTG CTCTAACCCC AAGAGGGGCT GAAGAGGGTC CTCGGGTGTA TTCTGATTAT
  TCAGTATGTT CGAGGCAACA GGGTTCATTG TCTCTGAAAT AAAAACAGGT TCCCAAGCCC
  CTTAGGACAT GGGACTCCAC ACCCAGTCTT TCAACCATGG AACAGACCCA AAACACCGCC
  TCCTCTCTCC ATCCTCGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886103	NES10953384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29838132					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886103	NES10953384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36988386 () rs orientation: forward

Symbol	Name	Function Class
Rhox9	reproductive homeobox 9	within coordinates
Tssr163173	transcription start site region 163173	1841 bp downstream
Tssr163174	transcription start site region 163174	1858 bp downstream
Tssr163175	transcription start site region 163175	1874 bp downstream