rs29838236 SNP Detail

Summary

• ID
  rs29838236
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:4376752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGCAAGA CTGTATGTTG
  AAATGACTGA ATTGGATTTA GCAGAAGCAG CTTCTGTTGA AAATTCATTA AATAACCCAG
  TAAATCCAAA TGCGGTTTCT GCCAGAGATT CTGTTGTAAT TTAGCATTTG TGTGATGGCT
  TAAGTTTGAG AGCATTTTTA TATGCCCCTT GGGACATAAA AGAAAACCTG TGGAGTAGAA
  M
  AGAAGGCATT ATTGCAACGT TGTTTTAATT TCGTTCCTAT TTTCTGTGTG CACATGTGAG
  TGTTGTGTCT GTGTGTATGG TTGCATATGT GTGGGCACGT GTGTAAGTGC GTGTGGGCAT
  GAGTGTGTGG CTCTTTCAAA CTGTTCATCG AGGCAGGATC TCAATCAAAC CCAGAGCCGG
  AAGAAGTGCT AGTGTCAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48391403	NES12278270	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	A		C	C	A	C
ss146573634	ENSMUSSNP6349327	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29838236					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48391403	NES12278270	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:4376752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9667	CpG island 9667	579 bp distal
Gm26865	predicted gene, 26865	within coordinates
Gm50096	predicted gene, 50096	within coordinates
Mtpap	mitochondrial poly(A) polymerase	within coordinates
Rr370335	regulatory region 370335	1023 bp downstream
Rr533218	regulatory region 533218	1150 bp distal
Rr533219	regulatory region 533219	960 bp distal
Tssr149909	transcription start site region 149909	1129 bp downstream