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rs29838238 SNP Detail
Summary
  • ID
    rs29838238
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr18:4375539 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGACTTCCTC TTCAACAAAA
    TGTGAATAAA GCGTAACAAG TTAAACGCTG TATAATGGAG TAGCAACACT TCACCAGGGT
    TCAGTGAGGC ACACAGAAAG TTAAATTCAG ACCACGTAAG TATATGCAAA CCTCAGCAAT
    TTCTATTCTG GCCTTCGTAT TTTGCTTTCT ACTTGATAGT GACTACCTAG TTTGACCTAA
    W
    GGGCTTCCCG TTGTTGCGGT CTCTCGGCGC GCATGCTCAT AAGCCCGCTG ACCTTTGGCG
    TTTACTTCCT GCTGCCCTGA TAATGGCTGC TCGCGGCGTG GGGTTATTGA CCCGTTTGCC
    CGTGTGTTCC CAGAGACGGA ACCGAATCCC GCGCTCTATT TCCAGGCTCC TCAGTTGTCC
    AGGGACTATT GCGGCGAGCA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss48391405 NES12278294 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T A T T A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29838238 SNP T T T T T T T T T T A T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48391405 NES12278294 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:4375539 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9667 CpG island 9667 within coordinates
Gm26865 predicted gene, 26865 within coordinates
Gm50096 predicted gene, 50096 within coordinates
Mtpap mitochondrial poly(A) polymerase 53 bp upstream
Rr370335 regulatory region 370335 3 bp upstream
Rr533218 regulatory region 533218 within coordinates
Rr533219 regulatory region 533219 232 bp proximal
Tssr149909 transcription start site region 149909 44 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory