rs29838239 SNP Detail

Summary

• ID
  rs29838239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:4375446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTAGC ACTTTTAAAA
  AGATATCTAA CTAGGGATTT AAAACGTGCC TATTTAGGAA CAAAACAATA ACTTTGGTAG
  TCTGACTTGA GACTGACTTC CTCTTCAACA AAATGTGAAT AAAGCGTAAC AAGTTAAACG
  CTGTATAATG GAGTAGCAAC ACTTCACCAG GGTTCAGTGA GGCACACAGA AAGTTAAATT
  M
  AGACCACGTA AGTATATGCA AACCTCAGCA ATTTCTATTC TGGCCTTCGT ATTTTGCTTT
  CTACTTGATA GTGACTACCT AGTTTGACCT AATGGGCTTC CCGTTGTTGC GGTCTCTCGG
  CGCGCATGCT CATAAGCCCG CTGACCTTTG GCGTTTACTT CCTGCTGCCC TGATAATGGC
  TGCTCGCGGC GTGGGGTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48391406	NES12278292	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29838239					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48391406	NES12278292	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:4375446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9667	CpG island 9667	25 bp proximal
Gm26865	predicted gene, 26865	within coordinates
Gm50096	predicted gene, 50096	within coordinates
Mtpap	mitochondrial poly(A) polymerase	146 bp upstream
Rr370335	regulatory region 370335	96 bp upstream
Rr533218	regulatory region 533218	within coordinates
Rr533219	regulatory region 533219	325 bp proximal
Tssr149909	transcription start site region 149909	137 bp upstream