rs29838394 SNP Detail

Summary

• ID
  rs29838394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37282011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTAACAA ACATCACACC
  TACTCAACTT CCCACTCCTG TGAATCAGGC AACTCTAAGC CAAACACAAG GAAGTGAAGA
  ATTGCTAGTG TCTTCAGCTT CAACACATCT GACTCCTAAC ATTATTTTGT TAAATCAGGC
  TCCACTTACT GCACCACCGA GTGCCAGTTC TTCACTCCCA AATCATATGT CCTCTTCAGT
  Y
  AATGTCCTTG TACAGAATCA GCAGACGCCT AACAGTGCTG TTTTAACAGG AAACAAGGCT
  GAGGAAGAGG AAGAAATTAT AGATGATGAT GATGACATCA TTAGCTCCAG TCCAGACTCA
  GCAGTCAGTA ATACATCTCT GGTCCCTCAG GCTGATAACT CCAAAAGTAC CACTTTAGAT
  GGATCATTGA CACAGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887645	NES10949987	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29838394					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887645	NES10949987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37282011 () rs orientation: forward

Symbol	Name	Function Class
Rr8558	regulatory region 8558	1410 bp distal
Zbtb33	zinc finger and BTB domain containing 33	within coordinates