rs29838761 SNP Detail

Summary

• ID
  rs29838761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32877353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTTCTT CAACCCCCTA
  GGCTTCCAGG AGCAACAGCA GCTGAGAGGA GCCATTCACC AGCTCACATC TCCTTCCAGT
  AGCAGGACTT CTGTGGAGAA GGAACTTCTC CTCCATTTCC CAAGGTTCTT AGATGGTGAC
  GTCATGCTGA TGATTCTCTG TCTCCCCAGG AGTCTTTGTA AGATTCTATC GGAGAAGGGC
  Y
  TGGTAGTCAG GCCTGACTTA GCTAACCAGG GGAGGCCTGT GAGCCCATCT ACTTGTGGGA
  AAGCTTTGTT AGGGGTTTGG TGAATCTCCC TGAGCTTGTC CACCAAGTGT CACCATTGCC
  TGGAATGGTT AGAAATGAGA GTTTTGGGAG TTTTTGCTTC CCAAGCCAGA TCTTCTGAAA
  CAGACATGGC ATGGGAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss46888051	NES10812368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs29838761					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888051	NES10812368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32877353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575028	regulatory region 575028			within coordinates
Rr575029	regulatory region 575029			1816 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant