rs29839078 SNP Detail

Summary

• ID
  rs29839078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40365665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC CCTTCATACC CTGGAGACCC
  Y
  CTCAAGATCC CCACACTTGC TGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46347709	mCV24918372	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss136330418	ENSMUSSNP7169397	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss322916239	CHEV_9_40261954	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29839078					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40365665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	783 bp proximal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676837	regulatory region 676837	1889 bp distal
Rr676838	regulatory region 676838	1975 bp distal
Rr676839	regulatory region 676839	1035 bp proximal
Rr676840	regulatory region 676840	1291 bp proximal
Rr676841	regulatory region 676841	1466 bp proximal
Tssr84449	transcription start site region 84449	924 bp upstream
Tssr84450	transcription start site region 84450	1522 bp upstream
Tssr88934	transcription start site region 88934	973 bp downstream
Tssr88935	transcription start site region 88935	1049 bp downstream
Tssr88936	transcription start site region 88936	1074 bp downstream
Tssr88937	transcription start site region 88937	1137 bp downstream
Tssr88938	transcription start site region 88938	1405 bp downstream
Tssr88939	transcription start site region 88939	1412 bp downstream
Tssr88940	transcription start site region 88940	1468 bp downstream
Tssr88941	transcription start site region 88941	1750 bp downstream
Tssr88942	transcription start site region 88942	1768 bp downstream
Tssr88943	transcription start site region 88943	1783 bp downstream
Tssr88944	transcription start site region 88944	1826 bp downstream
Tssr88945	transcription start site region 88945	1861 bp downstream
Tssr88946	transcription start site region 88946	1943 bp downstream
Tssr88947	transcription start site region 88947	1971 bp downstream