rs29839674 SNP Detail

Summary

• ID
  rs29839674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32877398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGCCAT TCACCAGCTC
  ACATCTCCTT CCAGTAGCAG GACTTCTGTG GAGAAGGAAC TTCTCCTCCA TTTCCCAAGG
  TTCTTAGATG GTGACGTCAT GCTGATGATT CTCTGTCTCC CCAGGAGTCT TTGTAAGATT
  CTATCGGAGA AGGGCTTGGT AGTCAGGCCT GACTTAGCTA ACCAGGGGAG GCCTGTGAGC
  M
  CATCTACTTG TGGGAAAGCT TTGTTAGGGG TTTGGTGAAT CTCCCTGAGC TTGTCCACCA
  AGTGTCACCA TTGCCTGGAA TGGTTAGAAA TGAGAGTTTT GGGAGTTTTT GCTTCCCAAG
  CCAGATCTTC TGAAACAGAC ATGGCATGGG AGATGAGTTG TTTCATGTTT TAAAAGCTGG
  GGAGATGGCA CAGTCAGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888054	NES10812369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29839674					SNP	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888054	NES10812369	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32877398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575028	regulatory region 575028			36 bp distal
Rr575029	regulatory region 575029			1771 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant