rs29839704 SNP Detail

Summary

• ID
  rs29839704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40642738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CCCGTAAGCC CAGTTCTTTT
  W
  ACTGTAAGTT ACTAAAAGAA CCCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46345367	mCV23404180	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss136336774	ENSMUSSNP6287036	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322918977	CHEV_9_40539525	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29839704					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40642738 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	337 bp distal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	within coordinates
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	485 bp distal
Rr676904	regulatory region 676904	within coordinates
Rr676905	regulatory region 676905	150 bp proximal
Rr676906	regulatory region 676906	911 bp proximal
Tssr84462	transcription start site region 84462	464 bp downstream
Tssr84463	transcription start site region 84463	428 bp downstream