rs29840027 SNP Detail

Summary

• ID
  rs29840027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40714990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA ACATACATAT GTTGAGTAGA
  Y
  TGCAGTTACA GTGCGTTGTT TCTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46348718	mCV23403478	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136338446	ENSMUSSNP2379910	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322919713	CHEV_9_40611777	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29840027					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40714990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21603	CpG island 21603	1803 bp distal
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	1410 bp proximal
Snord14c	small nucleolar RNA, C/D box 14C	26 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	301 bp upstream
Snord14e	small nucleolar RNA, C/D box 14E	1054 bp upstream
Tssr84482	transcription start site region 84482	1781 bp downstream
Tssr84483	transcription start site region 84483	1325 bp downstream
Tssr84484	transcription start site region 84484	1038 bp downstream
Tssr84485	transcription start site region 84485	530 bp upstream
Tssr84486	transcription start site region 84486	1045 bp upstream