rs29840110 SNP Detail

Summary

• ID
  rs29840110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA AAAAGGGTGA TGTTTATTTG
  Y
  TGGAAAGAGC AGGAAGGAAG ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46346722	mCV23541036	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss61442851	NES16830271	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T	T	C	C	C	C
ss136830325	ENSMUSSNP2871533	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29840110					SNP	C	C	T	C	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442851	NES16830271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142998 () rs orientation: forward

Symbol	Name	Function Class
Rr684929	regulatory region 684929	1650 bp distal
Rr684930	regulatory region 684930	1397 bp distal
Rr684931	regulatory region 684931	507 bp distal
Rr684932	regulatory region 684932	179 bp proximal
Rr684933	regulatory region 684933	1209 bp proximal
Tfdp2	transcription factor Dp 2	Intron
Tssr2975	transcription start site region 2975	1711 bp downstream
Tssr86594	transcription start site region 86594	1932 bp downstream
Tssr86595	transcription start site region 86595	1684 bp downstream
Tssr86596	transcription start site region 86596	1668 bp downstream