rs29840127 SNP Detail

Summary

• ID
  rs29840127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36991084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGAATAA TTTTATTAAA TTATGCAAAT TCCCTTCAAA
  GCAAATGGCA AAGGCATACC AGTTAATAAA GTGGTACCAA TTGAACTCTC TCACGTCTGG
  Y
  CCACATCATG GTTTGCCCGG ATGCACATAC TCTTCACTGC CCCTTCTTTG GTTGTGGTGC
  CCTGAGTAGC CCTGTGTGGT GGCAAATATT CAGGAACTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886121	NES10953392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29840127					SNP	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886121	NES10953392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36991084 () rs orientation: forward

Symbol	Name	Function Class
Rhox9	reproductive homeobox 9	437 bp upstream
Rr690761	regulatory region 690761	1695 bp proximal
Tssr163173	transcription start site region 163173	842 bp upstream
Tssr163174	transcription start site region 163174	828 bp upstream
Tssr163175	transcription start site region 163175	797 bp upstream