rs29840427 SNP Detail

Summary

• ID
  rs29840427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44439388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA AAAGACCAAA GCATGAGAAA
  Y
  TCCAAGGAAT GGAAAGGGAC TTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46348229	mCV24320742	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss47688824	NES11324469	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T		C	T		C	T	C	C		C
ss136396681	ENSMUSSNP5920549	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss322941055	CHEV_9_44336174	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29840427					SNP	C	C	T	C	T	T	T	C	C	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688824	NES11324469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44439388 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1647 bp upstream
Rr401337	regulatory region 401337	1300 bp downstream
Rr677693	regulatory region 677693	1180 bp distal
Rr677694	regulatory region 677694	266 bp proximal
Tssr89168	transcription start site region 89168	1668 bp upstream
Tssr89169	transcription start site region 89169	1651 bp upstream
Tssr89170	transcription start site region 89170	1590 bp upstream
Tssr89171	transcription start site region 89171	1576 bp upstream