rs29840556 SNP Detail

Summary

• ID
  rs29840556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42173921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGA AACCAGAGGT TTGCAGCATC
  R
  GCCACAGCTG GGAGGTGTTT GCTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46349018	mCV23263843	ABI	CRAMUS_MOUSE	f	SNP		A	A					G
ss52006412	NES15025801	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A		G	A	G	G
ss136379307	ENSMUSSNP122939	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss322933970	CHEV_9_42070708	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29840556					SNP	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006412	NES15025801	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42173921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	1029 bp proximal
Gm10690	predicted gene 10690	1733 bp upstream
Rr368719	regulatory region 368719	1878 bp upstream
Rr401326	regulatory region 401326	1568 bp upstream
Rr677189	regulatory region 677189	970 bp proximal
Rr677190	regulatory region 677190	1565 bp proximal
Rr677191	regulatory region 677191	1845 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	1846 bp upstream
Tssr89017	transcription start site region 89017	484 bp upstream
Tssr89018	transcription start site region 89018	1579 bp downstream
Tssr89019	transcription start site region 89019	1601 bp downstream