rs29840708 SNP Detail

Summary

• ID
  rs29840708
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32878236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTTTCA GCCAGAATAC
  CTTCTCTGTC ACCTCTCCCC TGGGTGACCC AGACATGCTT CAAAGCTGGC CCGGTGTTAA
  CTGTGAGGAC CCCTCTCCCC AACCTGGGCT AGGCTCTCCC TTTCTTTTTT TCCCCCTGTT
  TTTATGCCAT TTCTTTTTCT TTTTTCTTTT GGTCACTAGG TAGAATACAG ATTGTCCAAA
  S
  CATGGAATAT GTAAGGCCAG AATAGAGAAT CAAAGGGAAA TAACAGAAAA CTAAAAGTTA
  CACCATTTAC AATAAGTCTG TGTTACTAAT CCTGACTCTT TTTCTCTGAT TGCTTATTCT
  TAAGACCCTG AACATAGGCT TTGGAATGAA AAGCATGACT AAATTACCAA TGTGGTACTC
  TAATTTTGCT ATACTATTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888069	NES10812296	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29840708					SNP	C	C	C	C	C	C	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888069	NES10812296	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32878236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575028	regulatory region 575028			874 bp distal
Rr575029	regulatory region 575029			933 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant