rs29840857 SNP Detail

Summary

• ID
  rs29840857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107446827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TGGCGCACAT TGCACAGATA
  S
  CAGTTCCTCT GCAGTGTACC TAACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46347828	mCV24367297	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss136948478	ENSMUSSNP5424660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss323191681	CHEV_9_107471959	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29840857					SNP	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107446827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22295	CpG island 22295	within coordinates
Hyal2	hyaluronoglucosaminidase 2	within coordinates
Rr205696	regulatory region 205696	within coordinates
Rr368856	regulatory region 368856	661 bp downstream
Tssr86996	transcription start site region 86996	1687 bp downstream
Tssr86997	transcription start site region 86997	493 bp downstream
Tssr86998	transcription start site region 86998	473 bp downstream
Tssr86999	transcription start site region 86999	444 bp downstream