rs29841018 SNP Detail

Summary

• ID
  rs29841018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43019567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCTTATG AAGGGCCTGC TGTACCCAGG ACTGTTGTAA
  GCATCAGAAA TCCACTGTCT AGCTGGTTAT GGTAGCTTCC ACCTTTACTC CCAGCACTTG
  R
  AAGGCTGAGG TAGGAGGATG ACTTGTGAAT TTGGAGGAAG GCTACATGGT GAGTTTCAGG
  CCAGCCTGTG CTACAGAGCA AAGCCCTGTC TCAAAAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46347729	mCV24039484	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss136387473	ENSMUSSNP4677908	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322936918	CHEV_9_42916355	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29841018					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43019567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21624	CpG island 21624	1574 bp distal
Rr677325	regulatory region 677325	1795 bp distal
Rr677326	regulatory region 677326	822 bp distal
Rr677327	regulatory region 677327	358 bp distal
Tlcd5	TLC domain containing 5	378 bp downstream
Tssr89080	transcription start site region 89080	1249 bp upstream
Tssr89081	transcription start site region 89081	1163 bp upstream
Tssr89082	transcription start site region 89082	1130 bp upstream