rs29841494 SNP Detail

Summary

• ID
  rs29841494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32878390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTTT TCTTTTGGTC
  ACTAGGTAGA ATACAGATTG TCCAAACCAT GGAATATGTA AGGCCAGAAT AGAGAATCAA
  AGGGAAATAA CAGAAAACTA AAAGTTACAC CATTTACAAT AAGTCTGTGT TACTAATCCT
  GACTCTTTTT CTCTGATTGC TTATTCTTAA GACCCTGAAC ATAGGCTTTG GAATGAAAAG
  Y
  ATGACTAAAT TACCAATGTG GTACTCTAAT TTTGCTATAC TATTGTTCAC GTCCTAAGTT
  TGACCCTTAA GCTGCCAGGG AATAGTTAGT GTCTTGGGTG TTTTGTGTAC TGTGATTCTA
  GATGCCTCTG GGGCTTTGTA GAATTGACCC CATGGCATTG CCCGGGGAGA GGACCAGAGG
  CCAGGCCTCT CCCGGTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888075	NES10812300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29841494					SNP	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888075	NES10812300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32878390 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575028	regulatory region 575028			1028 bp distal
Rr575029	regulatory region 575029			779 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant