rs29841614 SNP Detail

Summary

• ID
  rs29841614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAC CTGCTTTTCC CATGGCTTTG
  Y
  CTACCTGTCT ACCTATCTGC CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46347437	mCV25163669	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss136411219	ENSMUSSNP1767673	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss322943295	CHEV_9_45211797	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29841614					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315012 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1612 bp distal
Rr195107	regulatory region 195107	1589 bp proximal
Rr200381	regulatory region 200381	1812 bp distal
Rr206351	regulatory region 206351	1788 bp proximal
Rr209195	regulatory region 209195	989 bp proximal
Tssr84783	transcription start site region 84783	1140 bp downstream
Tssr84784	transcription start site region 84784	1088 bp downstream
Tssr84785	transcription start site region 84785	556 bp downstream
Tssr84786	transcription start site region 84786	525 bp downstream
Tssr84787	transcription start site region 84787	504 bp downstream
Tssr84788	transcription start site region 84788	473 bp downstream
Tssr84789	transcription start site region 84789	446 bp downstream