rs29842136 SNP Detail

Summary

• ID
  rs29842136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118530947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT TGTGTCTGCT TCCAGTCCTG
  Y
  ACCTCCTGCT TTCTCTTTGC ATTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46346270	mCV23815869	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss137041927	ENSMUSSNP3155272	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29842136					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118530947 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688308	regulatory region 688308	1519 bp distal
Rr688309	regulatory region 688309	402 bp distal
Tssr87646	transcription start site region 87646	1469 bp upstream
Tssr87647	transcription start site region 87647	1496 bp upstream
Tssr87648	transcription start site region 87648	1512 bp upstream
Tssr87649	transcription start site region 87649	1556 bp upstream
Tssr87650	transcription start site region 87650	1598 bp upstream
Tssr87651	transcription start site region 87651	1616 bp upstream
Tssr87652	transcription start site region 87652	1893 bp upstream
Tssr91958	transcription start site region 91958	10 bp upstream