rs29842269 SNP Detail

Summary

• ID
  rs29842269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32879197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCCAT TTTGTTTTGA
  GTCACTTCTC ATTTAGACCC CACCATTCAG CCTGCAGTGG GGTAGGTGAC CGTGGGGGAG
  GTGTGTCCGT GGAGGAGACA GAGGTCCAAG GGCAGGAGGA AAGTAACAGA TCTCCATTCT
  ACTTTAATGT GTCCATTATG GGCCCACCCA GCATTGGGGA CTTTAAGGGA CTTCTTCAGG
  Y
  TTGTTCAGAG TCTGGGGTGT AACAGCGATG CAATGTAAGC TATGATGTGT TATGCAATTA
  GAGCTCCCCC TCCCCCAGAG CACTTACAGG CTATTTGATA TGGCACTTAA AATGTACACT
  CGAAGATTTC AGGCCTGAGA ACAAGCAGTG TGTCTGGCTT TGGCTCCGGG AGGTCCCACA
  TGTGTAGCTT TGTTGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888090	NES10812209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29842269					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888090	NES10812209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32879197 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575028	regulatory region 575028			1835 bp distal
Rr575029	regulatory region 575029			within coordinates
Rr575030	regulatory region 575030			1708 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant