rs29842278 SNP Detail

Summary

• ID
  rs29842278
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107426535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG ATATCCCTGA AAGCCCTCTC
  S
  GTGCTTCGCT ACATCACAGA CTGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46345873	mCV24365955	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	G
ss136948272	ENSMUSSNP2369108	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		G
ss323191577	CHEV_9_107451667	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29842278					SNP	C	C	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107426535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22291	CpG island 22291	1877 bp distal
Cpgi22292	CpG island 22292	1603 bp proximal
Gm34106	predicted gene, 34106	within coordinates
Rr368855	regulatory region 368855	1764 bp upstream
Rr401661	regulatory region 401661	1987 bp downstream
Tssr86983	transcription start site region 86983	1957 bp downstream
Tssr86984	transcription start site region 86984	1434 bp upstream
Tssr91394	transcription start site region 91394	1499 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	within coordinates