rs29843004 SNP Detail

Summary

• ID
  rs29843004
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:84117436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAAC TGCAGCCACA
  TACGAGAGCT TTTTGAGAGA CCAGAAATAT TTATATTTAA AGGCTTCCTT TATTGTTTAC
  AAAAGTAATA AATTGGTAAA ATTGGTATGG GTTGTTTTTG GAGTTTTTGC AGAACTGTGT
  CTCAGTGTTA TTACTAGTTG GGACAGTCAC ATGACTTGGA AAACACTGAC ACGAAGCAGT
  K
  TGTTGGCTTC TCTGAGGCAT CATAGCACAG GGGCTCACTT TGTGGAAGCT GGAATCAAAT
  GCTCAGGTTT TGGTTCTTCT TTCCATGATT ATACAGTTGT GTGAACCCGA GTTATTGATT
  ATTTCATGGT TGTGTCCTTA TAAAATGAAG GTCATACCAG CAGCATCCAA TTTGTAGTTA
  ATTTGTAAGG AGAATTCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46346066	mCV22788407	ABI	CRAMUS_MOUSE	f	SNP		G					T		T
ss52030588	NES15049422	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G		T	T	T	T		T	G	T	T		T
ss136716934	ENSMUSSNP1053425	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
ss323047773	CHEV_9_84128990	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29843004					SNP	G	G	T	G	G	G	T	T	T	T	T	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52030588	NES15049422	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:84117436 () rs orientation: forward

Symbol	Name	Function Class
Tssr86376	transcription start site region 86376	1229 bp downstream