rs29843084 SNP Detail

Summary

• ID
  rs29843084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37399863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG GGCTCTGGAG CTCTTTCATG
  Y
  CCCCATTATA GATACTGTAT AAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46346278	mCV23154100	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss136310480	ENSMUSSNP6406104	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss322907202	CHEV_9_37296152	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29843084					SNP	T	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37399863 () rs orientation: forward

Symbol	Name	Function Class
BB236558	expressed sequence BB236558	140 bp downstream
Cpgi21578	CpG island 21578	247 bp proximal
Gm69832	predicted gene, 69832	within coordinates
Msantd2	Myb/SANT-like DNA-binding domain containing 2	454 bp upstream
Rr676695	regulatory region 676695	within coordinates
Rr676696	regulatory region 676696	681 bp proximal
Rr676697	regulatory region 676697	1040 bp proximal
Tssr2827	transcription start site region 2827	495 bp upstream
Tssr84392	transcription start site region 84392	203 bp upstream
Tssr84393	transcription start site region 84393	421 bp upstream
Tssr84394	transcription start site region 84394	456 bp upstream
Tssr84395	transcription start site region 84395	714 bp upstream
Tssr88840	transcription start site region 88840	1262 bp downstream