rs29843432 SNP Detail

Summary

• ID
  rs29843432
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:109691202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA GAACTCATCA CCTTTGCCCA
  S
  TAGAGAATCA CATCTCCCAG AATGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46348564	mCV23329696	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C
ss61450576	NES16836842	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	G	C	C	C	C
ss136958069	ENSMUSSNP6773375	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29843432					SNP	G	G	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61450576	NES16836842	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:109691202 () rs orientation: forward

Symbol	Name	Function Class
Gm39427	predicted gene, 39427	within coordinates
Gm68591	predicted gene, 68591	within coordinates
Rr401695	regulatory region 401695	303 bp upstream
Rr687008	regulatory region 687008	192 bp proximal
Rr687009	regulatory region 687009	421 bp proximal
Rr687010	regulatory region 687010	467 bp proximal
Rr687011	regulatory region 687011	1956 bp proximal
Tssr87256	transcription start site region 87256	524 bp downstream
Tssr87257	transcription start site region 87257	494 bp downstream
Tssr87258	transcription start site region 87258	478 bp downstream