rs29843911 SNP Detail

Summary

• ID
  rs29843911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCTTTC CTTGGGAGAA
  TTTATTATTT CCTTGAAGAA CATAGAGAGG GCAACCTCAG AAGTCTCTCT GGCAGAACTC
  TCCTGCTACG GCTTCTAGCA GATGTATACT GTCTCCCTGA GTTCCACAGA AGTCAAGATG
  ATGCTTCCTG GTCATGCTTA GCTCAAGGAT CTTTCCTGGG AGCAGCCTAA GTCACCCTCA
  Y
  ACTGAATTGT AATTGTCAGC ATCTTGTCTG CCCCTAGCTA GACTGTTGGC TGTGTAAAGA
  CAAGGGACCA TACCTGTCAT ATCACCAATA TAAATCTAGT GTCCAGTCCA GTGCTTGGAA
  AATAGTAGGT CTTCAGTAAA TATTTATTGA ATGACTAAGA AGGAAGGGTT AGTCAGAAAA
  GGAGTCCAAA AGAAGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46346875	mCV25082947	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136396120	ENSMUSSNP6872513	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29843911					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388203 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1534 bp proximal
Gm10023	predicted gene 10023	1018 bp downstream
Gm22540	predicted gene, 22540	391 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	603 bp distal
Rr203857	regulatory region 203857	637 bp distal
Rr206312	regulatory region 206312	597 bp proximal
Rr209143	regulatory region 209143	within coordinates