rs29844900 SNP Detail

Summary

• ID
  rs29844900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37277939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGGACAT GCAAACTTTA
  TATGCCCCAG TACAGGGGAA CGCCAGGGCC AAAAAGTGGG ACTGGGTGGG TAGGGGAGTG
  GGGGGGTGTG TGTGGGACTT TTGGGCTAGC ATTGGAAATG TAATTGAGGA AAATACATAA
  TAAAAAATAT TTTAAAAAAT AATGATAAAC AATACAAATA TTATTGCCTT TCAAGGTAGG
  K
  CTCATTTGAC ACTATTTGGT TTGTTATTCC TTCTCTGTAG TTCTATACTT TTAAAATACT
  TTTATTCGTG TGTATGTACC TGCCGAGCCC TCTGAAATGA GAGAAACTTG TCTTATCTGC
  TTTTCTATCC CACAGGGCCT GGAGTATATT TGCTGCAGAT CAAATGTGAT CTCTATGTTA
  ATAGATATGC AGTTAACAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887621	NES10950030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29844900					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887621	NES10950030	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37277939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22678	CpG island 22678	444 bp proximal
Rr8558	regulatory region 8558	261 bp proximal
Tssr160779	transcription start site region 160779	670 bp upstream
Tssr160780	transcription start site region 160780	718 bp upstream
Tssr160781	transcription start site region 160781	767 bp upstream
Tssr160782	transcription start site region 160782	788 bp upstream
Zbtb33	zinc finger and BTB domain containing 33	731 bp upstream