rs29845020 SNP Detail

Summary

• ID
  rs29845020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52004107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAATAC CAAGTGTAGG
  AGAGAAAAAG CAGCATTTTC CTTACCAATC TTAAGCCTGA AGGGTAAGGA TTCCAAGACT
  AAAACATATA CATTTATTTA ATGTCAGTTT TGTGTTACAC AAGAGATCAT CAGAAATTTG
  GAAATCTTTG TGCTTTTGTG GACTGCCATG CAGAAGTTTG ACTAGAAAAC CACAGGGGTA
  Y
  AATATACTCA TAAACTTGAG GCCAGCAATG TAGCAAAACC CATTTGTTCA TATTTTTTTC
  CTGTGTCTTC ATACAGTCTT TTCAGATATA GGAAAGATAT CTCTAAGGTG AGCAACTCAA
  AACATTTTAA ATTAAAAAGG AATTTTTAAT TATTCGTTTT ATGTGTGTTT GTGTTTTTGC
  CTGCCTGTCT GTATACTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47885850	NES11683533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29845020					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47885850	NES11683533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52004107 () rs orientation: forward

Symbol	Name	Function Class
Gm44077	predicted gene, 44077	within coordinates
Rr379355	regulatory region 379355	within coordinates
Rr630311	regulatory region 630311	449 bp distal
Rr630312	regulatory region 630312	221 bp proximal
Tssr56493	transcription start site region 56493	499 bp downstream