rs29846877 SNP Detail

Summary

• ID
  rs29846877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3859308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTACCA CACACATATA
  TGGGCATGCA TGTATATACA TACACATGTT CAGTTGGAAT CTGTTAAATC TGGGGATACA
  GAACAGAGGA CAAAGAATGT CAACTGTAAT TGACCAATTT CTGTGTTCTC CCCTCATAAA
  AACTTACATT TCAAGTCAGA ATGACAGAAG AAAAAAAAAA CCCACTTAGC ACTTAGAGAC
  R
  TGTTGAAGTG GCTATATTCT ACAAAAGACA GAACAGGGGC TGAGAAGAGT TGGAGAAGAC
  ATAGACATTT GCTGAGTGAC TACTACTGAG TACAGAGTAA CGTCCCCAGC GTGTAGTTTC
  AAAGATCTAC CTGCTCAGCT CTGGTGGTGT GGCTTGGAAA CCTTATCTCC ACAGGAGACA
  AACAGAAGTT CAGATAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48392347	NES12276904	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29846877					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392347	NES12276904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3859308 () rs orientation: forward

Symbol	Name	Function Class
Gm55120	predicted gene, 55120	800 bp upstream
Rpl7a-ps6	ribosomal protein L7A, pseudogene 6	728 bp upstream
Rr393188	regulatory region 393188	966 bp downstream