rs29847209 SNP Detail

Summary

• ID
  rs29847209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3900009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACACAAT ATAATCAAAT
  AGGCTGACTG GGGAGTCACA AGCAACAGTC TTGAATAAGG AAGCAAAGGC ATTCTGTGCA
  TGGCAGGGTT TGAAAACATC TGCTTCAGAA CATTGTCATC CTAGGTTTCT GTCCACTTTG
  AAAGCCAAAG GCTCTAAACA CATTGCTGGC TTTGTCTTAT GATCAAGTGC CACACCTAGC
  R
  ACATTTATGG ATTTGTTGAG GCATAAATTG GTCGTGTCTT AGTTAGAATT TCTATTGCCA
  TAAAACAGCA TAACTTGTGA GCAGTTTAGG AAGGAAAGGG TTTATTTGGT TTACACTTCA
  CATCACCATC CATTATTGAC AGCCATGACG ACAGAAACTC AAGCCGGGTA GAAACCTGAA
  GGCAAGAGCT GATGCAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48392256	NES12275901	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29847209					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392256	NES12275901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3900009 () rs orientation: forward

Symbol	Name	Function Class
Rr393189	regulatory region 393189	875 bp downstream