rs29847614 SNP Detail

Summary

• ID
  rs29847614
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52130663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CATTTTGCCA GTACTTTGAT
  K
  ATGAAGATGG AGGAAATAAA AAAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss45957218	mCV22670217	ABI	CRAMUS_MOUSE	f	SNP		G	T					G	T
ss47887024	NES11693902	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	T		T	T	G		T
ss133190910	ENSMUSSNP4036723	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
ss321799637	CHEV_6_52103682	CHEVERUD	SCREENING_POP	f	SNP												T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs29847614					SNP	G	G	T	G	T	G	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47887024	NES11693902	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52130663 () rs orientation: forward

Symbol	Name	Function Class
Hoxa1	homeobox A1	1910 bp downstream
Rr449	regulatory region 449	within coordinates
Rr450	regulatory region 450	240 bp distal
Rr379358	regulatory region 379358	within coordinates
Rr630343	regulatory region 630343	7 bp distal
Rr630344	regulatory region 630344	156 bp proximal