rs29848044 SNP Detail

Summary

• ID
  rs29848044
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52002016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGAAAT GAGGAAATTG
  GCATGAAGGA ATACAGATCT GGTTTCCTCC TGATTAAATA AGCCTCAGAA AGCATCACCC
  AGGCAAGCAC TGATAAGGCG CACGGATGAC CCAGAGGGAC TTCCTGAGGC TGTGAGGCTG
  GATCCAAAGC ACAGGACGAG AAGCTGCACT CGGGTGGGAG AGACACAGCC TTGCCATGCA
  S
  AAAAGGGAGC CAGAAGAGGA TAGACAGCAT AGCTCTGGAA ATTCGATACT GTGGAGAACA
  AAAGGACTTC CCATTGGAGG GCTTCTGATT TCTGCTGATA AGGCTGAGGT CATCTAACTG
  AGTAGGTGGA TGGGGAATAG AAATTTGCTT TTTTTTTTTA ATGTTTAATA AAAATCAACT
  AGTGCGGTAG CAGGAATGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47885804	NES11683641	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29848044					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47885804	NES11683641	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52002016 () rs orientation: forward

Symbol	Name	Function Class
Gm44077	predicted gene, 44077	within coordinates
Rr379355	regulatory region 379355	829 bp upstream
Rr630311	regulatory region 630311	1139 bp proximal
Tssr56493	transcription start site region 56493	1583 bp upstream