rs29848156 SNP Detail

Summary

• ID
  rs29848156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3897372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTCAGA GAGAAAATGG
  AAAAGGAGGT GATTCTCCAG TTCAGTGACC CCAAAGCACA GATCGCTTTC TCTTCCCAGA
  TTTCCCTTCT CAGCGTCTTG TGCTTGATTA TACAAGGTAA TCCCACCTCT CTTGTGTCCA
  GAACTATGAA AATCTGATTT CAAATATCCT TTAAAATAAT TATCAGTTAA TCACTCTATC
  Y
  TCTATGCCAC AGCAGCCAGA AGCTCTCCCA CCCCCTTTAG TGGGCAGTGC AGAATGTGAT
  TCTCCTACCC TCACACCAAT TACCCCTCAG TAAAAATGTT CTCCATCAAC CTGTCATCCA
  TCATCCATTA TCCATCCTTT CATCCATCCA TCCATCCATC CATCCATCCA TCCATCCATC
  CATCTTTCCA TGCATGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48392263	NES12276004	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29848156					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392263	NES12276004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3897372 () rs orientation: forward

Symbol	Name	Function Class
Rr393189	regulatory region 393189	551 bp upstream