rs29848157 SNP Detail

Summary

• ID
  rs29848157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3897038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACTATAG TGTCTTCCAG
  AAACACAGGT CAGGGCCCCT CAGCAGGGAT TTGGCTGGCC CTGCCTGATG TCATTCTTCC
  CACCAGTTTC AAGCTGGAGT GCTTGCCTGT GGCCAGGGAG TGTATTCCGA AGCATTCCTG
  TTTGCCAACT CAGGCCCCGG GCTGCTGGGA ACTTGCAGTT GCTTTCATGG AGCTCTCTGT
  R
  TGTGACAGGG TGTGCCCAGC TCTTAAAGTG CTTTGATGAA AACGTCTTTG TGCTAAAAAG
  CTCTACACAT ACAGAGAGTA GACCAGGGCG TGGCATCTCC AGTATACTGC CATTGTCAGC
  AGTTATCAAA GGCTCAAGTC AGAGAGAAAA TGGAAAAGGA GGTGATTCTC CAGTTCAGTG
  ACCCCAAAGC ACAGATCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48392264	NES12276003	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29848157					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392264	NES12276003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3897038 () rs orientation: forward

Symbol	Name	Function Class
Rr393189	regulatory region 393189	885 bp upstream