rs29850054 SNP Detail

Summary

• ID
  rs29850054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52107423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTCAAGA CACAGAAGAA
  ATGGAGAAGA AAAGAGCAAT TACTGTCTGT TGTGTAAAAA AAAAAAAAAA TACACCTTCA
  AGTTGCTAAG TGAGTGAATA GAGATCTATT ACAACGTTGC CAAAAATGCT ACTCATGCGG
  GGATCATCCC CTAGTGCTCT TAATTGTAGA AATTGGCTCA TTTAATGACA TCCAAATGAA
  Y
  GGGAACGTCT TTCAGTTGTC TGAAAGGCAT GGTTGTTTAT ATCACAACAA AGATGGCTTT
  TGCTGGCTTC TCTGTAGTAG GGCTTTTACA TTTATAAGCC TCCATGTTCC CATCTCTAGT
  CTGTAGAAAT GCTGTCGAGA AGTTCTAAAC TGGAGAAAAT TAGCAATGTT TGCAATCTGA
  TCATGAAGAC CCTCCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47886954	NES11695136	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29850054					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47886954	NES11695136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52107423 () rs orientation: forward

Symbol	Name	Function Class
Rps19-ps14	ribosomal protein S19, pseudogene 14	1335 bp downstream