rs29850839 SNP Detail

Summary

• ID
  rs29850839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70079270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATAAGG ACACTCCTTC
  ATTCTGTATG GACGGGCATG AACTGGCCTG AGTAGACAGG CCCCTCCCAC TTACTGTTAA
  GAGACACTGG GAGCAGAAGG GAACAAACAG CCTGTGCTGA TTTCACACAG CTGAGGATGC
  AAATAGGCAG GGTTTCCCAA ACAGTTTCAC AGACAGTAAC TTGTTTGATC TGCACGTGAG
  R
  GCATCCGCAT GTACTCTGGC AGCTGGAATC TATGCAGATC AAGGAAAGCT TTCCAAAGTA
  CCTGTTCCTG AAGCACAGAG GGGGAGATGA GATAGGTTTT CAGGCAGCTG TAGATACCGT
  GAGTGAACAC AAGTCATCCG TTCTAAATGA GACCACCATC GGGAGTGGAT ACAGAGCCCC
  TTTCTTCTTC ACAAACACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47888169	NES11932202	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29850839					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47888169	NES11932202	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70079270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	1145 bp proximal
Gm66806	predicted gene, 66806	within coordinates
Rr433587	regulatory region 433587	1623 bp distal
Rr433588	regulatory region 433588	within coordinates
Rr433589	regulatory region 433589	1170 bp proximal
Rr433590	regulatory region 433590	1716 bp proximal
Rr433591	regulatory region 433591	1997 bp proximal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	1836 bp upstream
Tssr94008	transcription start site region 94008	1643 bp upstream
Tssr94009	transcription start site region 94009	1800 bp upstream
Tssr94010	transcription start site region 94010	1820 bp upstream