rs29850843 SNP Detail

Summary

• ID
  rs29850843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70080486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGT GACAGCCTGG TTCTACTTCA
  R
  GACACCTGAC GGTCTTCACA TAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47888173	NES11932137	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	A		G		A	A	G		G
ss147164730	ENSMUSSNP4171302	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A								G
ss323355955	CHEV_10_69707404	CHEVERUD	SCREENING_POP	f	SNP									G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29850843					SNP	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47888173	NES11932137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70080486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	within coordinates
Gm66806	predicted gene, 66806	within coordinates
Rr433588	regulatory region 433588	1150 bp distal
Rr433589	regulatory region 433589	within coordinates
Rr433590	regulatory region 433590	500 bp proximal
Rr433591	regulatory region 433591	781 bp proximal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	620 bp upstream
Tssr94008	transcription start site region 94008	427 bp upstream
Tssr94009	transcription start site region 94009	584 bp upstream
Tssr94010	transcription start site region 94010	604 bp upstream
Tssr94011	transcription start site region 94011	1759 bp upstream