rs29851745 SNP Detail

Summary

• ID
  rs29851745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70080749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGGAGT TGTCCCAAAG
  GAAAGCCCTT GGCATCTTAT ACTCCCTACT GCCAAAGAGT ACCAACTTCA CAAAGTTCTA
  GGTTTCTAGT TCGCTTTCCT CTGGGATCTC TGCCCACGAG TACAGCTCTG GCCAGGAGGC
  TCCCAGCGAC CCAGGGAAGC CAGGGAGAGC AGGCGACCCT TGTATTCAGT TCCACACAGG
  Y
  TCCTCGCAAA TGCACACGGT GCTTGGCGGG GGGTATGCGG GAGAGCTTCG GGAGACCAAG
  GGGACTCGGG TCCGGCCCTC CCCCCACTCC TAGCCGGGCC TTAAGCTACG GGTGTAGACG
  CAGCGCCCCT ACCGCCGGCT TTTCCACCGC CTCCATCTCC TCCTCCTCCG CCTCCTCTTC
  CTTCCCCCAG CGGGCGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47888175	NES11932140	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	T		C	T	C
ss147164740	ENSMUSSNP2044643	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29851745					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47888175	NES11932140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70080749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	within coordinates
Gm66806	predicted gene, 66806	within coordinates
Rr433588	regulatory region 433588	1413 bp distal
Rr433589	regulatory region 433589	within coordinates
Rr433590	regulatory region 433590	237 bp proximal
Rr433591	regulatory region 433591	518 bp proximal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	357 bp upstream
Tssr94008	transcription start site region 94008	164 bp upstream
Tssr94009	transcription start site region 94009	321 bp upstream
Tssr94010	transcription start site region 94010	341 bp upstream
Tssr94011	transcription start site region 94011	1496 bp upstream