rs29851749 SNP Detail

Summary

• ID
  rs29851749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70081294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGGGCG GCGGCCGTAT
  ATTGCGCGCA GCGGGACTGC TCGCCCAGCG CAGGGCCCGG ATCAGCAGCT GCGGCCGGAG
  CTGCGCCCGC GGCCCCAGCC GAGGCCGGGA CTCAGGTAAA AACCCCAGGA ACTGGGAAGG
  TCCCGGCGGG AGCTGTCCCC TCACCCTGCA AACTGCACCG AAAGGAGGCG GTGCTGTCAC
  Y
  CGCGGGTGCA CAGCTACCGG CCGGCTTCTG GTCTGCCCGG GCTGAAAGCG TCCTGAGAGC
  GCCGCGGAGC ACTCTGCACC CTCTTCTAGA AAGAGTAACT GCCTCTGCAA AAATACTCGT
  AGGGTTGCCT TTTGCAGGGA GAATGGGGGA GATGAGAGCT CGGATGTCAC CAGATGAGTC
  TCCTGGGATA CCTTCTACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J
ss47888179	NES11932149	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J
rs29851749					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47888179	NES11932149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70081294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	within coordinates
Gm66806	predicted gene, 66806	298 bp upstream
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	within coordinates
Tssr94008	transcription start site region 94008	324 bp downstream
Tssr94009	transcription start site region 94009	210 bp downstream
Tssr94010	transcription start site region 94010	146 bp downstream
Tssr94011	transcription start site region 94011	951 bp upstream