rs29851753 SNP Detail

Summary

• ID
  rs29851753
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70081770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGCGCA TAGGTTTGGT
  AAACTGCAAG GACAGCAGCT CACGTTGCGG GCAGATCCTG CTGGGTTCCG GGCAGGGCAG
  CACCCGGGCT GCGCTACAGG GTGTAGGAGC CTAACGGCCA GGCGGCTCCT CCGCCACCTG
  AACAAAACTT AGAAGGATTT TGGTGCGCAT GCCTCAGCTC TGGTTCGCCT AGGGAACCCT
  W
  CTTTGGTTTT AGCCATGCAC AGAGGCTTCA GGGGAAACAG CAAGCCATGG AACTTGACCA
  TCAATCAGGT CGGGATTTTA CTTCGTTCTT GGAATGTCAG GTCTATGCAG CACAAATGAT
  CCGGAAAGTT TAGGCAGTGT TTACACTACA GATATTATTT ACATATTATT TATGTTGATA
  TCTTACTTGC CTCATTGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47888183	NES11932153	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29851753					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47888183	NES11932153	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70081770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	12 bp distal
Gm66806	predicted gene, 66806	774 bp upstream
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	within coordinates
Tssr94008	transcription start site region 94008	800 bp downstream
Tssr94009	transcription start site region 94009	686 bp downstream
Tssr94010	transcription start site region 94010	622 bp downstream
Tssr94011	transcription start site region 94011	475 bp upstream