rs29851914 SNP Detail

Summary

• ID
  rs29851914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7295771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGACCA GTAAAACCTT
  CCCTCCAGAA TATTAGACGG TCATAAAATT AAATACAAAA TAAACTGAGC TTTTCTTTTC
  TGCCATTTTA ACAAAGGCGT TGAAATAAAA TGTTTGAGAC AGAGAGTGGA GATTTTACTT
  TCTGCACCAC ATTAAAATGT AAAATCCATA ACAGGACTTC AGCAGCTCTC TCCAGGGGAC
  Y
  ATTTCCTGCT GAGATCAGAA TAGCAACACT GTGTGACCAA AAGGCAGGCA GGAAGAGACA
  TTGTTGGCAT CTAGCTGGGA GTGTCAAGGA TACAAATACT GTTTTTCTGC ATAGGAGTGC
  CTAGCAGGAT GAACTCTGCT GAAATCTGCA ACAGCTGGTG TTTGGAAAAC TTCAGAGAAG
  TTAATATCAC CGCCTAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48393880	NES12224778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29851914					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48393880	NES12224778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7295771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9684	CpG island 9684	1988 bp proximal
Odad2	outer dynein arm docking complex subunit 2	within coordinates
Tssr152370	transcription start site region 152370	1293 bp downstream