rs29852171 SNP Detail

Summary

• ID
  rs29852171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24244400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAGTCA CTACAGCCAG
  CCTGTTTATC CCTCATGGTC CACACCATGT GTGGGGAACT GGGGACTGAA CTTGAACTTT
  GCACATGATA GGAACACACA CTACCACTCA ATGGCACCCC AGCCTGCTTC TGAGTTTTCA
  TTTTAAAGAC TGGGTCTCAT TAAGTTGTCT CAGCCTTGAA CTTACTCTGT CTTCTGGGCG
  R
  ACTCAGCCAT GTTCACACCT TTCCCTGCTT GATCATAAAT TCTTCTCATA GACCTTACAA
  TGCAAAGGAA ATGCATGGCC CCCAGAAAGA AAGCCTTTCT CCGTGACCTC ATGTTAGTGG
  TACACTCCCA CCTTCCAATG TCTAAGCAAA TCCAGGAGTT ACTTTTGTGT CAGCTCCTGG
  ATCTACCCAA ATTAGCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss47388381	NES11357972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A		A		G
ss324294206	CHEV_13_24152286	CHEVERUD	SCREENING_POP	f	SNP									A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29852171					SNP	A	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47388381	NES11357972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24244400 () rs orientation: forward

Symbol	Name	Function Class
4933427I18Rik	RIKEN cDNA 4933427I18 gene	within coordinates
Carmil1	capping protein regulator and myosin 1 linker 1	within coordinates
Tssr121764	transcription start site region 121764	1104 bp upstream
Tssr121765	transcription start site region 121765	1093 bp upstream