rs29852685 SNP Detail

Summary

• ID
  rs29852685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:70081791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCAAGG ACAGCAGCTC
  ACGTTGCGGG CAGATCCTGC TGGGTTCCGG GCAGGGCAGC ACCCGGGCTG CGCTACAGGG
  TGTAGGAGCC TAACGGCCAG GCGGCTCCTC CGCCACCTGA ACAAAACTTA GAAGGATTTT
  GGTGCGCATG CCTCAGCTCT GGTTCGCCTA GGGAACCCTT CTTTGGTTTT AGCCATGCAC
  R
  GAGGCTTCAG GGGAAACAGC AAGCCATGGA ACTTGACCAT CAATCAGGTC GGGATTTTAC
  TTCGTTCTTG GAATGTCAGG TCTATGCAGC ACAAATGATC CGGAAAGTTT AGGCAGTGTT
  TACACTACAG ATATTATTTA CATATTATTT ATGTTGATAT CTTACTTGCC TCATTGGGCC
  CATCTGATGG GCTACAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47888185	NES11932155	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29852685					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47888185	NES11932155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70081791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	33 bp distal
Gm66806	predicted gene, 66806	795 bp upstream
Rr433589	regulatory region 433589	851 bp distal
Rr433590	regulatory region 433590	305 bp distal
Rr433591	regulatory region 433591	503 bp distal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	Intron
Tssr94008	transcription start site region 94008	821 bp downstream
Tssr94009	transcription start site region 94009	707 bp downstream
Tssr94010	transcription start site region 94010	643 bp downstream
Tssr94011	transcription start site region 94011	454 bp upstream