rs29853111 SNP Detail

Summary

• ID
  rs29853111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37651907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACCTGCA CAAGCTGAGG
  AGGGTGAAAA AAATAAACCA GGAAAACAGA AACACATTCA ACAGATAAAA AGTTAAGTCA
  AAATACATTT TAAACCCTGA CTTTCTATGT TCATCAAACT CCTAAGCAGT AATCTCAAAC
  ACCAGGATAC ACACATTTTC TAATATCTGC AGGTCAGTAC TTAAGAGCCC ATTGTAGTGA
  Y
  GAAAGACGCA GTTAACGGTT TCTACCTTTA GACTAGTGAT AGTCACTACT TCGGTGTATA
  TACACAGCAG TTTTCGTTTT CAGACCTTAC CTTCGGGAAG GATTGCAGAA ACCCAAAAGA
  TGTTTCGCCA AACTCTGCTA GTTTCACAAA TACAGTACTC TACACTTAAA ACCTAACCAT
  AAATCTCATT TAAAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46889391	NES10957302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29853111					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46889391	NES10957302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37651907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22681	CpG island 22681	1358 bp proximal
Cul4b	cullin 4B	within coordinates
Gm61874	predicted gene, 61874	1650 bp upstream
Rr8561	regulatory region 8561	within coordinates
Tssr163211	transcription start site region 163211	1032 bp downstream
Tssr163212	transcription start site region 163212	1092 bp downstream
Tssr163213	transcription start site region 163213	1123 bp downstream
Tssr163214	transcription start site region 163214	1160 bp downstream
Tssr163215	transcription start site region 163215	1257 bp downstream
Tssr163216	transcription start site region 163216	1315 bp downstream
Tssr163217	transcription start site region 163217	1489 bp downstream
Tssr163218	transcription start site region 163218	1605 bp downstream
Tssr163219	transcription start site region 163219	1860 bp downstream
Tssr163220	transcription start site region 163220	1895 bp downstream
Tssr163221	transcription start site region 163221	1923 bp downstream
Tssr163222	transcription start site region 163222	1961 bp downstream