rs29854338 SNP Detail

Summary

• ID
  rs29854338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70041262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCTGCA GCCTCTTTGA
  CATGGTCACT TCTCAGAGGC CTGAGAAGTA GGTCACTGTG TTTTCTGTCT GGCAAGGGAG
  GACCCTGGAA TTCAGAGAGC CAGATGCCTT GCCCAGTCAT CCTGGGCAAA ACTGACACTT
  GATATCCCAG TCCCTCTTCA AGGCCATATA TTAGCATAGC TCTCTGCTTT GGCTGTGTGA
  R
  TCTCATTCCT GGGCATGTGT ACATGTCTAG ATACAAACTA TTTTTGCTGT TGTTTAGAAA
  CTTTTTTTGT TTGGTTGGTT TTGCGAGACA GGGTTTCCCT GTGCAGCCCT GGCTGTCCTG
  GAACTCGGTC TGTAGACCAG GCTGGCCTCA AATTCAGAGA TCCACCTGCC TCTGCTTCCT
  GAGTGCTAGG AGCGACTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47887809	NES11934452	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss147164635	ENSMUSSNP2080474	ENSEMBL	ENSEMBL_Sanger	f	SNP		G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29854338					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47887809	NES11934452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70041262 () rs orientation: forward

Symbol	Name	Function Class
Mrln	myoregulin	within coordinates
Rr433580	regulatory region 433580	755 bp distal
Rr433581	regulatory region 433581	within coordinates
Rr433582	regulatory region 433582	1336 bp proximal
Tssr94004	transcription start site region 94004	793 bp downstream
Tssr94005	transcription start site region 94005	780 bp downstream
Tssr94006	transcription start site region 94006	762 bp downstream
Tssr94007	transcription start site region 94007	748 bp downstream