rs29857229 SNP Detail

Summary

• ID
  rs29857229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7297940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACAGCT GAAGGACTGG
  AGCTGCTGGG AAGAGGGTGA GAGGCACCAC AGTGGAGACC AAGAGGGATG GGAGAGAGAT
  GAGACTAGGG GGGACCCAAG GACAGAAAGG CCCGAAGAAA ATCCAGACTG TGAGCCCGAC
  CTCAGCGCAC GCCACGGAGA CTACTCACCT GCAGTGTCGC CTGGCACCCA GGTGCCCGCG
  Y
  GCTTCGTTGC TAGGACACCA GTAAACACCC GCCCGCCGCG CTGGAAGCCC CAGCCTGGGA
  GGAAACACTG AGTGACTCCA GCCTCTAGTC GCTGCTGCTC AGAACCCAGA GCCCTGCATC
  TTGAAAACAC CAGGATTCTT CCAGCAGCCT GCAGAGCCCT AGGGCTCATG CCAGCTCAGT
  CTAGGTACTT GGGAGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48393863	NES12224706	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	T	T	T		T	T	T	C		C
ss325522182	CHEV_18_7297938	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29857229					SNP	C	T	C	T	C	C	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48393863	NES12224706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7297940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9684	CpG island 9684	within coordinates
Gm58896	predicted gene, 58896	38 bp upstream
Odad2	outer dynein arm docking complex subunit 2	4 bp upstream
Tssr152370	transcription start site region 152370	868 bp upstream